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    LOC4340490 putative 12-oxophytodienoate reductase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340490, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4340490
    Gene description
    putative 12-oxophytodienoate reductase 2
    Locus tag
    OSNPB_060216200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OPR1; OPR2; RRJ4; opda; OPR11; opda2; OPDAR1; OsOPR1; OsOPR2; OsJ_20594; OsJ_20595
    Expression
    Biased expression in roots before flowering (RPKM 107.0) and leaves before flowering (RPKM 16.3) See more
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    Genomic context

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    See LOC4340490 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6079724..6081686, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5912641..5914603, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281446 Neighboring gene putative 12-oxophytodienoate reductase 3 Neighboring gene UDP-glycosyltransferase 91C1-like Neighboring gene 12-oxophytodienoate reductase 1 Neighboring gene pentatricopeptide repeat-containing protein At3g29230

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Diverse environmental cues transiently regulate OsOPR1 of the "octadecanoid pathway" revealing its importance in rice defense/stress and development. Agrawal GK, et al. Biochem Biophys Res Commun, 2003 Oct 31. PMID 14559225
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in jasmonic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oxylipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative 12-oxophytodienoate reductase 2
    Names
    12-oxo-phytodienoic acid reductase
    12-oxophytodienoate-10,11-reductase 1
    12-oxophytodienoic acid reductase
    LOC_Os06g11280
    LOC_Os06g11290
    OPDA-reductase 1
    OPDA-reductase 2
    P0537F07.34
    P0537F07.35
    P0537F07.35-1
    P0537F07.35-2
    oxo-phytodienoic acid reductase
    putative 12-oxophytodienoic acid reductase
    NP_001408323.1
    NP_001408324.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421394.1 → NP_001408323.1  putative 12-oxophytodienoate reductase 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AP014962
      UniProtKB/Swiss-Prot
      A0A0P0WUE5, Q69TH4

    2. NM_001421395.1 → NP_001408324.1  putative 12-oxophytodienoate reductase 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AP014962
      UniProtKB/Swiss-Prot
      A0A0P0WUE5, Q69TH4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6079724..6081686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69TH4.1 GenPept UniProtKB/Swiss-Prot:Q69TH4

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