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    LOC4352779 histone-lysine N-methyltransferase ATXR7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352779, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352779
    Gene description
    histone-lysine N-methyltransferase ATXR7
    Locus tag
    OSNPB_120613100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352779 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26682327..26692085, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25960564..25976067, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit A-7 Neighboring gene cationic amino acid transporter 1-like Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene single myb histone 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase ATXR7
    Names
    Os12g0613100
    Os12g0613200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26682327..26692085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021767.2 → XP_025877552.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    2. XM_066306682.1 → XP_066162779.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      Q0ILY4, Q2QM91

    3. XM_026021768.2 → XP_025877553.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    4. XM_066306681.1 → XP_066162778.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      Q0ILY4, Q2QM91

    5. XM_066306684.1 → XP_066162781.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      Q0ILY4, Q2QM91

    6. XM_026021770.2 → XP_025877555.1  histone-lysine N-methyltransferase ATXR7 isoform X2

      UniProtKB/TrEMBL
      B9GE94
      Conserved Domains (2) summary
      smart00317
      Location:874 → 997
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:997 → 1013
      PostSET; Cysteine-rich motif following a subset of SET domains
    Nucleotide Protein
    Heading Accession and Version

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