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    LOC4323845 cysteine protease XCP2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323845, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323845
    Gene description
    cysteine protease XCP2
    Locus tag
    OSNPB_010971400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4323845 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43508232..43510052)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42855636..42857417)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 5-like Neighboring gene uncharacterized LOC4323844 Neighboring gene cytochrome b5-like Neighboring gene glycerol-3-phosphate dehydrogenase [NAD(+)]

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine protease XCP2
    Names
    Os01g0971400
    P0518C01.11
    putative cysteine protease CP1
    xylem cysteine proteinase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43508232..43510052
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785228.3 → XP_015640714.1  cysteine protease XCP2

      UniProtKB/TrEMBL
      A0A481P820, A0A5S6R8S5, A0A8J8XD09, A2WZK0, A3A1Z0, Q0JFN1, Q94DH7
      Conserved Domains (2) summary
      smart00848
      Location:52 → 107
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:139 → 362
      Peptidase_C1; Papain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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