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    LOC9266898 LEC14B protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266898, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9266898
    Gene description
    LEC14B protein
    Locus tag
    OSNPB_010383700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9266898 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (16110600..16120172)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (16046654..16056254)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937618 Neighboring gene uncharacterized LOC107280736 Neighboring gene nuclear pore complex protein NUP98A Neighboring gene probable LRR receptor-like serine/threonine-protein kinase RKF3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LEC14B protein
    Names
    Os01g0383700
    WD domain, G-beta repeat domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      16110600..16120172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756825.2 → XP_015612311.1  LEC14B protein isoform X1

      UniProtKB/TrEMBL
      B8A8J2, B9EWW7
      Conserved Domains (2) summary
      sd00039
      Location:110 → 144
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:110 → 438
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015756878.2 → XP_015612364.1  LEC14B protein isoform X4

      Conserved Domains (2) summary
      sd00039
      Location:110 → 144
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:38 → 321
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015756853.3 → XP_015612339.1  LEC14B protein isoform X2

      Conserved Domains (3) summary
      COG2319
      Location:82 → 427
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:120 → 171
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:119 → 406
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_015756835.3 → XP_015612321.1  LEC14B protein isoform X1

      UniProtKB/TrEMBL
      B8A8J2, B9EWW7
      Conserved Domains (2) summary
      sd00039
      Location:110 → 144
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:110 → 438
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_015756827.3 → XP_015612313.1  LEC14B protein isoform X1

      UniProtKB/TrEMBL
      B8A8J2, B9EWW7
      Conserved Domains (2) summary
      sd00039
      Location:110 → 144
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:110 → 438
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_015756842.2 → XP_015612328.1  LEC14B protein isoform X1

      UniProtKB/TrEMBL
      B8A8J2, B9EWW7
      Conserved Domains (2) summary
      sd00039
      Location:110 → 144
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:110 → 438
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_066310917.1 → XP_066167014.1  LEC14B protein isoform X3

    RNA

    1. XR_003242439.2 RNA Sequence

    2. XR_003242438.2 RNA Sequence

    3. XR_010741615.1 RNA Sequence

    4. XR_010741617.1 RNA Sequence

    5. XR_003242440.2 RNA Sequence

    6. XR_010741616.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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