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    LOC4329922 uncharacterized LOC4329922 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329922, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329922
    Gene description
    uncharacterized LOC4329922
    Locus tag
    OSNPB_020606100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1058_F07.22
    Expression
    Ubiquitous expression in flower buds (RPKM 26.3), flowers (RPKM 19.6) and 6 other tissues See more
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    Genomic context

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    See LOC4329922 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24231697..24235786, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23749124..23753234, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene chitinase 6-like Neighboring gene uncharacterized LOC4329921 Neighboring gene B-box zinc finger protein 25 Neighboring gene tRNA (guanine(37)-N1)-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329922
    Names
    Os02g0606100
    eukaryotic translation initiation factor 2A
    putative eukaryotic translation initiation factor 2A

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24231697..24235786 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022685.2 → XP_025878470.1  uncharacterized protein LOC4329922 isoform X2

      UniProtKB/TrEMBL
      Q6K8R0
      Conserved Domains (2) summary
      pfam08662
      Location:216 → 409
      eIF2A; Eukaryotic translation initiation factor eIF2A
      sd00039
      Location:278 → 314
      7WD40; WD40 repeat [structural motif]

    2. XM_015770975.3 → XP_015626461.1  uncharacterized protein LOC4329922 isoform X1

      UniProtKB/TrEMBL
      B8AF26, B9F0Z2, Q6K8R0
      Conserved Domains (3) summary
      COG5354
      Location:48 → 469
      COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
      sd00039
      Location:278 → 314
      7WD40; WD40 repeat [structural motif]
      pfam08662
      Location:216 → 409
      eIF2A; Eukaryotic translation initiation factor eIF2A
    Nucleotide Protein
    Heading Accession and Version

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