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    LOC4341692 uncharacterized LOC4341692 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341692, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341692
    Gene description
    uncharacterized LOC4341692
    Locus tag
    OSNPB_060651300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 3.6), roots before flowering (RPKM 2.5) and 6 other tissues See more
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    Genomic context

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    See LOC4341692 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27524938..27528558, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26660958..26664804, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene NADPH HC-toxin reductase 1 Neighboring gene uncharacterized LOC4341691 Neighboring gene probable protein phosphatase 2C 58 Neighboring gene hydrophobic protein LTI6A-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341692
    Names
    Os06g0651300
    P0453H04.38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27524938..27528558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788350.3 → XP_015643836.1  uncharacterized protein LOC4341692 isoform X2

      UniProtKB/TrEMBL
      A2YFP4
      Conserved Domains (2) summary
      sd00020
      Location:248 → 270
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:246 → 270
      zf-met; Zinc-finger of C2H2 type

    2. XM_015788349.3 → XP_015643835.1  uncharacterized protein LOC4341692 isoform X1

      UniProtKB/TrEMBL
      A2YFP4, A3BE51
      Conserved Domains (2) summary
      sd00020
      Location:255 → 277
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:253 → 277
      zf-met; Zinc-finger of C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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