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    LOC4330272 rapid alkalinization factor 23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330272, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330272
    Gene description
    rapid alkalinization factor 23
    Locus tag
    OSNPB_020670500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1725_H08.43
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    Genomic context

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    See LOC4330272 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27715276..27716024)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27228712..27229603)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene HMG1/2-like protein Neighboring gene pentatricopeptide repeat-containing protein At4g21300 Neighboring gene uncharacterized LOC136355464

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rapid alkalinization factor 23
    Names
    Os02g0670500
    P0684A08.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27715276..27716024
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771540.3 → XP_015627026.1  rapid alkalinization factor 23

      UniProtKB/TrEMBL
      A0A0P0VMW2, A0A5S6RB52, A2X861, Q0DYS8, Q6ESP9
      Conserved Domains (1) summary
      cl23823
      Location:67 → 118
      RALF; Rapid ALkalinization Factor (RALF)
    Nucleotide Protein
    Heading Accession and Version

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