U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4332147 homeobox-leucine zipper protein HOX19-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332147, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4332147
    Gene description
    homeobox-leucine zipper protein HOX19-like
    Locus tag
    OSNPB_030231150
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Hox19; OsHox19; OJ1017C11.5; OJ1781E12.8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4332147 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6980012..6982449)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6931566..6933978)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable inactive poly [ADP-ribose] polymerase SRO2 Neighboring gene inositol-tetrakisphosphate 1-kinase 2-like Neighboring gene branched-chain-amino-acid aminotransferase 5, chloroplastic Neighboring gene squalene monooxygenase SE1 Neighboring gene squalene monooxygenase SE1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Agalou A, et al. Plant Mol Biol, 2008 Jan. PMID 17999151
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox-leucine zipper protein HOX19
    Names
    HD-ZIP protein HOX19
    Homeodomain transcription factor HOX19
    LOC_Os03g12860
    Os03g0231150

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417438.1 → NP_001404367.1  homeobox-leucine zipper protein HOX19

      Status: VALIDATED

      Source sequence(s)
      AP014959

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6980012..6982449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772358.3 → XP_015627844.1  homeobox-leucine zipper protein HOX19 isoform X1

      UniProtKB/Swiss-Prot
      A2XE76, A5JPV5, A5JPV6, A5JPV7, Q6Q7E1, Q8GRL4
      Conserved Domains (2) summary
      smart00340
      Location:182 → 221
      HALZ; homeobox associated leucin zipper
      smart00389
      Location:124 → 180
      HOX; Homeodomain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GRL4.1 GenPept UniProtKB/Swiss-Prot:Q8GRL4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials