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    LOC4332197 RNA demethylase ALKBH10B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332197, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332197
    Gene description
    RNA demethylase ALKBH10B
    Locus tag
    OSNPB_030238800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332197 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7377859..7383449, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7329414..7335048, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 3 Neighboring gene uncharacterized LOC4332196 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 27 Neighboring gene uncharacterized LOC136355722

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA demethylase ALKBH10B
    Names
    Os03g0238800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7377859..7383449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775307.3 → XP_015630793.1  RNA demethylase ALKBH10B

      UniProtKB/TrEMBL
      B8AJZ2, Q10PC8
    Nucleotide Protein
    Heading Accession and Version

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