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    LOC4346940 mitogen-activated protein kinase kinase kinase NPK1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346940, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346940
    Gene description
    mitogen-activated protein kinase kinase kinase NPK1
    Locus tag
    OSNPB_090383300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346940 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (17367557..17373543)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13010056..13016124)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278921 Neighboring gene uncharacterized LOC136351671 Neighboring gene DEAD-box ATP-dependent RNA helicase 22-like Neighboring gene uncharacterized LOC136351741

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase kinase kinase NPK1
    Names
    Os09g0383300
    P0505H05.39
    putative protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      17367557..17373543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755401.3 → XP_015610887.1  mitogen-activated protein kinase kinase kinase NPK1

      UniProtKB/TrEMBL
      B8BF19, B9G3C5, Q6H602
      Conserved Domains (1) summary
      cd06606
      Location:100 → 363
      STKc_MAPKKK; Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

    RNA

    1. XR_001539729.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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