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    NCR1 natural cytotoxicity triggering receptor 1 [ Homo sapiens (human) ]

    Gene ID: 9437, updated on 10-Dec-2024

    Summary

    Official Symbol
    NCR1provided by HGNC
    Official Full Name
    natural cytotoxicity triggering receptor 1provided by HGNC
    Primary source
    HGNC:HGNC:6731
    See related
    Ensembl:ENSG00000189430 MIM:604530; AllianceGenome:HGNC:6731
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LY94; CD335; NKP46; NK-p46
    Summary
    Predicted to be involved in immune response-regulating signaling pathway. Predicted to act upstream of or within defense response to virus and detection of virus. Predicted to be located in cell surface. Predicted to be part of SWI/SNF complex. Predicted to be active in plasma membrane. Biomarker of acquired immunodeficiency syndrome; anogenital venereal wart; hepatitis C; and lymphoproliferative syndrome. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in spleen (RPKM 1.6), bone marrow (RPKM 0.4) and 12 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See NCR1 in Genome Data Viewer
    Location:
    19q13.42
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (54898198..54938208)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (57992503..58033237)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55417506..55424441)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak3560 silencer Neighboring gene RNA, U6 small nuclear 222, pseudogene Neighboring gene Sharpr-MPRA regulatory region 15416 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55404005-55404755 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55404756-55405506 Neighboring gene Fc alpha receptor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55431695-55432196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55432197-55432696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55450505-55451214 Neighboring gene NLR family pyrin domain containing 7 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:55461990-55462680 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55463371-55464060 Neighboring gene ribosomal protein L36a pseudogene 50 Neighboring gene NLR family pyrin domain containing 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55523225-55523784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55526346-55526910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55527390-55527890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55527891-55528391 Neighboring gene GP6 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55538985-55539689 Neighboring gene glycoprotein VI platelet

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env NK cells that respond with IFN-gamma and TNF-alpha cytokine production to HIV-1 gp120 peptides have reduced CD16 and NKp46 expression and have increased levels of CD57 PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ99094

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    natural cytotoxicity triggering receptor 1
    Names
    NK cell-activating receptor
    lymphocyte antigen 94 homolog (activating NK-receptor; NK-p46)
    natural killer cell p46-related protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145457.3NP_001138929.2  natural cytotoxicity triggering receptor 1 isoform b precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. This results in a shorter protein (isoform b) compared to isoform a.
      Source sequence(s)
      AC011476, AC245128, AJ001383, BC064806
      Consensus CDS
      CCDS46181.1
      UniProtKB/TrEMBL
      A0A0A0MTU0, M0QYD1
      Related
      ENSP00000471986.1, ENST00000594765.5
      Conserved Domains (2) summary
      cd05711
      Location:123210
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
      cd05751
      Location:27118
      Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
    2. NM_001145458.3NP_001138930.2  natural cytotoxicity triggering receptor 1 isoform c precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform c) compared to isoform a.
      Source sequence(s)
      AC011476, AC245128, AJ001383, AJ006121
      Consensus CDS
      CCDS46182.1
      UniProtKB/TrEMBL
      A0A0A0MR94, M0QYD1
      Related
      ENSP00000339515.4, ENST00000338835.9
      Conserved Domains (2) summary
      cd05711
      Location:123210
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
      cd05751
      Location:27118
      Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
    3. NM_001242356.3NP_001229285.1  natural cytotoxicity triggering receptor 1 isoform d precursor

      See identical proteins and their annotated locations for NP_001229285.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an alternate exon in the 5' coding region compared variant 1. The resulting protein (isoform d) is shorter but has the same N- and C-termini compared to isoform a.
      Source sequence(s)
      AC011476, AC245128, AJ001383, AJ006123
      Consensus CDS
      CCDS56103.1
      UniProtKB/Swiss-Prot
      O76036
      Related
      ENSP00000344358.4, ENST00000350790.9
      Conserved Domains (1) summary
      cd05711
      Location:28115
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
    4. NM_001242357.3NP_001229286.1  natural cytotoxicity triggering receptor 1 isoform e precursor

      See identical proteins and their annotated locations for NP_001229286.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks two alternate exons in the coding region compared to variant 1. The resulting protein (isoform e) is shorter but has the same N- and C-termini compared to isoform a.
      Source sequence(s)
      AC011476, AC245128, AJ001383, AJ006123
      UniProtKB/Swiss-Prot
      O76036
      Conserved Domains (1) summary
      cd05711
      Location:28115
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
    5. NM_004829.7NP_004820.2  natural cytotoxicity triggering receptor 1 isoform a precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AC011476, AC245128, AJ001383
      Consensus CDS
      CCDS12911.1
      UniProtKB/Swiss-Prot
      B0V3L2, B0V3L3, B0V3L4, B0V3L5, B8JL03, O76016, O76017, O76018, O76036
      UniProtKB/TrEMBL
      A0A0A0MQZ0, A0A0G2JN91, M0QYD1
      Related
      ENSP00000291890.3, ENST00000291890.9
      Conserved Domains (2) summary
      cd05711
      Location:123210
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
      cd05751
      Location:27118
      Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      54898198..54938208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047439727.1XP_047295683.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_011527530.4XP_011525832.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
      Conserved Domains (2) summary
      cd05711
      Location:123210
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
      cd05751
      Location:27118
      Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
    3. XM_011527529.4XP_011525831.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44
      Conserved Domains (2) summary
      cd05711
      Location:123210
      Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
      cd05751
      Location:27118
      Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_016107304.1 Reference GRCh38.p14 PATCHES

      Range
      235221..239170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_016107312.1 Reference GRCh38.p14 PATCHES

      Range
      1889..5838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003571054.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      801588..841606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054329706.1XP_054185681.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054329705.1XP_054185680.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054329704.1XP_054185679.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NW_003571055.2 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      543372..584149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330207.1XP_054186182.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054330206.1XP_054186181.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054330205.1XP_054186180.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_3

    Genomic

    1. NW_003571056.2 Reference GRCh38.p14 ALT_REF_LOCI_3

      Range
      878176..918933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330503.1XP_054186478.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054330502.1XP_054186477.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054330501.1XP_054186476.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_4

    Genomic

    1. NW_003571057.2 Reference GRCh38.p14 ALT_REF_LOCI_4

      Range
      905713..946470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330753.1XP_054186728.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054330752.1XP_054186727.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054330751.1XP_054186726.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_5

    Genomic

    1. NW_003571058.2 Reference GRCh38.p14 ALT_REF_LOCI_5

      Range
      880262..921019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330984.1XP_054186959.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054330983.1XP_054186958.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054330982.1XP_054186957.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_6

    Genomic

    1. NW_003571059.2 Reference GRCh38.p14 ALT_REF_LOCI_6

      Range
      816555..856573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331267.1XP_054187242.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054331266.1XP_054187241.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054331265.1XP_054187240.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_7

    Genomic

    1. NW_003571060.1 Reference GRCh38.p14 ALT_REF_LOCI_7

      Range
      802558..842560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331537.1XP_054187512.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054331536.1XP_054187511.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054331535.1XP_054187510.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_8

    Genomic

    1. NW_003571061.2 Reference GRCh38.p14 ALT_REF_LOCI_8

      Range
      610351..651108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054333581.1XP_054189556.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054333580.1XP_054189555.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054333579.1XP_054189554.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_9

    Genomic

    1. NT_187693.1 Reference GRCh38.p14 ALT_REF_LOCI_9

      Range
      880672..920690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054333683.1XP_054189658.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054333682.1XP_054189657.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054333681.1XP_054189656.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44

    Reference GRCh38.p14 ALT_REF_LOCI_23

    Genomic

    1. NT_187671.1 Reference GRCh38.p14 ALT_REF_LOCI_23

      Range
      185095..189044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_26

    Genomic

    1. NT_187674.1 Reference GRCh38.p14 ALT_REF_LOCI_26

      Range
      192168..196117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_27

    Genomic

    1. NT_187675.1 Reference GRCh38.p14 ALT_REF_LOCI_27

      Range
      276387..280336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_28

    Genomic

    1. NT_187676.1 Reference GRCh38.p14 ALT_REF_LOCI_28

      Range
      182098..186047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_29

    Genomic

    1. NT_187677.1 Reference GRCh38.p14 ALT_REF_LOCI_29

      Range
      183515..187464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_30

    Genomic

    1. NT_187683.1 Reference GRCh38.p14 ALT_REF_LOCI_30

      Range
      180366..184315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      57992503..58033237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054322692.1XP_054178667.1  natural cytotoxicity triggering receptor 1 isoform X3

    2. XM_054322691.1XP_054178666.1  natural cytotoxicity triggering receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JM44
    3. XM_054322690.1XP_054178665.1  natural cytotoxicity triggering receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JM44