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    YNCK0012C tRNA-His [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853797, updated on 25-Apr-2024

    Summary

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    Gene symbol
    YNCK0012C
    Gene description
    tRNA-His
    Primary source
    SGD:S000006598
    Locus tag
    YNCK0012C
    See related
    AllianceGenome:SGD:S000006598
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables ribosome binding activity and translation repressor activity. Involved in regulation of translation in response to stress. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See YNCK0012C in Genome Data Viewer
    Location:
    chromosome: XI
    Sequence:
    Chromosome: XI; NC_001143.9 (313401..313472, complement)

    Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene FG-nucleoporin NUP100 Neighboring gene nucleoside diphosphate kinase Neighboring gene Dpc7p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001143.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae. Preston MA, et al. RNA, 2013 Feb. PMID 23249748, Free PMC Article
    2. The requirement for the highly conserved G-1 residue of Saccharomyces cerevisiae tRNAHis can be circumvented by overexpression of tRNAHis and its synthetase. Preston MA, et al. RNA, 2010 May. PMID 20360392, Free PMC Article
    3. tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro. Bąkowska-Żywicka K, et al. FEMS Yeast Res, 2016 Sep. PMID 27609601, Free PMC Article
    4. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article
    5. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. Percudani R, et al. J Mol Biol, 1997 May 2. PMID 9159473

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • Histidine tRNA (tRNA-His), predicted by tRNAscan-SE analysis

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables ribosome binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables translation repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of translation in response to stress IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

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