NPP2 nucleotide diphosphatase/phosphodiesterase NPP2 [Saccharomyces cerevisiae S288C] - Gene

Summary

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Gene symbol: NPP2
Gene description: nucleotide diphosphatase/phosphodiesterase NPP2
Primary source: FungiDB:YEL016C
Locus tag: YEL016C
See related: SGD:S000000742; AllianceGenome:SGD:S000000742; VEuPathDB:YEL016C
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Saccharomyces cerevisiae S288C (strain: S288C)
Lineage: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary: Enables nucleoside-triphosphatase activity and nucleoside-triphosphate diphosphatase activity. Involved in nucleoside triphosphate metabolic process. Located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in several diseases, including arterial calcification of infancy; end stage renal disease; obesity; ossification of the posterior longitudinal ligament of spine; and type 2 diabetes mellitus. Orthologous to several human genes including ENPP1 (ectonucleotide pyrophosphatase/phosphodiesterase 1); ENPP3 (ectonucleotide pyrophosphatase/phosphodiesterase 3); and ENPP4 (ectonucleotide pyrophosphatase/phosphodiesterase 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See NPP2 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 1

Sequence:: Chromosome: V; NC_001137.3 (124737..126218, complement)

Chromosome V - NC_001137.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_001137.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that two orthologs of the E-NPP family, referred to as Npp1p and Npp2p, exist in budding yeast, can perform nucleotide phosphate hydrolysis, and can act in concert with Pho5p.
Title: Pho5p and newly identified nucleotide pyrophosphatases/ phosphodiesterases regulate extracellular nucleotide phosphate metabolism in Saccharomyces cerevisiae.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by SGD

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables nucleoside triphosphate diphosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables nucleoside triphosphate diphosphatase activity	IDA Inferred from Direct Assay more info	PubMed
enables nucleoside triphosphate diphosphatase activity	IEA Inferred from Electronic Annotation more info
enables nucleoside triphosphate diphosphatase activity	IGI Inferred from Genetic Interaction more info	PubMed
enables nucleoside triphosphate diphosphatase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables phosphodiesterase I activity	IEA Inferred from Electronic Annotation more info
enables ribonucleoside triphosphate phosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables ribonucleoside triphosphate phosphatase activity	IGI Inferred from Genetic Interaction more info	PubMed
enables ribonucleoside triphosphate phosphatase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables zinc ion binding	RCA inferred from Reviewed Computational Analysis more info	PubMed

Process	Evidence Code	Pubs
involved_in nucleoside triphosphate metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in nucleoside triphosphate metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in organophosphate metabolic process	IEA Inferred from Electronic Annotation more info
involved_in phosphate-containing compound metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	HDA more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nucleotide diphosphatase/phosphodiesterase NPP2

NP_010900.1

EC 3.1.4.1

EC 3.6.1.9

Nucleotide pyrophosphatase/phosphodiesterase; mediates extracellular nucleotide phosphate hydrolysis along with Npp1p and Pho5p; activity and expression enhanced during conditions of phosphate starvation; involved in spore wall assembly; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; NPP2 has a paralog, NPP1, that arose from the whole genome duplication; npp1 npp2 double mutant exhibits reduced dityrosine fluorescence relative to single mutants

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_001137.3 Reference assembly

Range

124737..126218 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001178831.1 → NP_010900.1 TPA: nucleotide diphosphatase/phosphodiesterase NPP2 [Saccharomyces cerevisiae S288C]

See identical proteins and their annotated locations for NP_010900.1

Status: REVIEWED

UniProtKB/Swiss-Prot

D3DLN4, P39997, Q6B2P3

UniProtKB/TrEMBL

A0A8H8ULJ9, B3LS01, C7GX28, N1P5D2

Conserved Domains (1) summary

COG1524
Location:43 → 479

Npp1; Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily [General function prediction only]