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    Erich2 glutamate rich 2 [ Mus musculus (house mouse) ]

    Gene ID: 66748, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Erich2provided by MGI
    Official Full Name
    glutamate rich 2provided by MGI
    Primary source
    MGI:MGI:1913998
    See related
    Ensembl:ENSMUSG00000075302 AllianceGenome:MGI:1913998
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933404M02Rik
    Summary
    Is expressed in embryo and notochord. Orthologous to human ERICH2 (glutamate rich 2). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward testis adult (RPKM 49.4) See more
    Orthologs
    human all
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    Genomic context

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    See Erich2 in Genome Data Viewer
    Location:
    2 C2; 2 41.55 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (70339015..70371229)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (70508671..70540885)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_04760 Neighboring gene ribosomal protein L9, pseudogene 7 Neighboring gene STARR-seq mESC enhancer starr_04762 Neighboring gene trans-acting transcription factor 5 Neighboring gene glutamate decarboxylase 1, opposite strand Neighboring gene STARR-seq mESC enhancer starr_04764 Neighboring gene glutamate decarboxylase 1 Neighboring gene predicted pseudogene 16510

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
    2. Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Tamplin OJ, et al. Dev Biol, 2011 Dec 15. PMID 22008794
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    glutamate-rich protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025744.2 → NP_080020.2  glutamate-rich protein 2

      Status: VALIDATED

      Source sequence(s)
      AK006384, AK016654, AK017113
      Consensus CDS
      CCDS38141.1
      UniProtKB/TrEMBL
      E9Q1A6
      Related
      ENSMUSP00000097619.3, ENSMUST00000100041.9
      Conserved Domains (1) summary
      PRK14954
      Location:25 → 86
      PRK14954; DNA polymerase III subunits gamma and tau; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      70339015..70371229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500029.4 → XP_006500092.1  glutamate-rich protein 2 isoform X4

      Conserved Domains (1) summary
      PRK14951
      Location:38 → 129
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    2. XM_006500030.3 → XP_006500093.1  glutamate-rich protein 2 isoform X5

      UniProtKB/TrEMBL
      D3Z5X9
      Related
      ENSMUSP00000122481.2, ENSMUST00000134607.8
      Conserved Domains (1) summary
      PRK14951
      Location:38 → 129
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    3. XM_006500028.5 → XP_006500091.1  glutamate-rich protein 2 isoform X2

      Conserved Domains (1) summary
      PRK14951
      Location:38 → 129
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    4. XM_030251959.2 → XP_030107819.1  glutamate-rich protein 2 isoform X3

      Conserved Domains (1) summary
      PRK14951
      Location:38 → 129
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    5. XM_006500027.4 → XP_006500090.1  glutamate-rich protein 2 isoform X1

      Conserved Domains (1) summary
      PRK14951
      Location:38 → 129
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    6. XM_036162483.1 → XP_036018376.1  glutamate-rich protein 2 isoform X6

    7. XM_030251961.1 → XP_030107821.1  glutamate-rich protein 2 isoform X6

    8. XM_030251960.1 → XP_030107820.1  glutamate-rich protein 2 isoform X6

    9. XM_011239739.2 → XP_011238041.1  glutamate-rich protein 2 isoform X6

      See identical proteins and their annotated locations for XP_011238041.1

    10. XM_011239740.4 → XP_011238042.1  glutamate-rich protein 2 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

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