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    LOC101929550 uncharacterized LOC101929550 [ Homo sapiens (human) ]

    Gene ID: 101929550, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101929550
    Gene description
    uncharacterized LOC101929550
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101929550 in Genome Data Viewer
    Location:
    8p12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (35672163..35710320, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (35948251..35986409, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (35529681..35567838, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379369 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:34939898-34941097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:35034197-35034738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:35143680-35144180 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:35144181-35144681 Neighboring gene unc-5 netrin receptor D Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:35234331-35234832 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:35234833-35235332 Neighboring gene MPRA-validated peak6991 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:35344139-35345338 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:35390756-35391343 Neighboring gene NANOG hESC enhancer GRCh37_chr8:35441394-35441898 Neighboring gene LSM12 pseudogene 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:35576107-35577009 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:35640853-35641498 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:35686142-35687341 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:35712099-35712599 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:35717700-35718899 Neighboring gene NANOG hESC enhancer GRCh37_chr8:35803026-35803568 Neighboring gene uncharacterized LOC124902062 Neighboring gene NANOG hESC enhancer GRCh37_chr8:35838029-35838530 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:35913168-35913997 Neighboring gene uncharacterized LOC105379370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125819.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137475

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      35672163..35710320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      35948251..35986409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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