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    ift46 intraflagellar transport 46 homolog (Chlamydomonas) [ Danio rerio (zebrafish) ]

    Gene ID: 565922, updated on 9-Dec-2024

    Summary

    Official Symbol
    ift46provided by ZNC
    Official Full Name
    intraflagellar transport 46 homolog (Chlamydomonas)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080102-3
    See related
    Ensembl:ENSDARG00000011240 AllianceGenome:ZFIN:ZDB-GENE-080102-3
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Acts upstream of or within several processes, including cilium assembly; determination of ventral identity; and retina development in camera-type eye. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ift46 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (29735900..29744923, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (29849842..29858588, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene discs, large homolog 2 (Drosophila) Neighboring gene uncharacterized LOC137496592 Neighboring gene HEPACAM family member 2 Neighboring gene VPS11 core subunit of CORVET and HOPS complexes Neighboring gene hypoxia up-regulated 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within determination of ventral identity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in intraciliary transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within pronephros development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within retina development in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    part_of intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of intraciliary transport particle B ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    intraflagellar transport protein 46 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346250.1NP_001333179.1  intraflagellar transport protein 46 homolog

      Status: VALIDATED

      Source sequence(s)
      CU861448, EH511467, EH537331
      UniProtKB/Swiss-Prot
      A7MBP4, Q0P418
      UniProtKB/TrEMBL
      A0A8M1P4B7, F1QMN4
      Related
      ENSDARP00000083038.5, ENSDART00000088605.7

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      29735900..29744923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)