U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:66479 zgc:66479 [ Danio rerio (zebrafish) ]

    Gene ID: 327541, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zgc:66479provided by ZNC
    Official Full Name
    zgc:66479provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031030-10
    See related
    Ensembl:ENSDARG00000008732 AllianceGenome:ZFIN:ZDB-GENE-031030-10
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi16e01; wu:fi16e01
    Summary
    Predicted to be located in membrane. Is expressed in several structures, including fin; median fin fold; myotome; pectoral fin bud; and periderm. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zgc:66479 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (46736243..46742451, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (46734361..46740569, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene thymocyte expressed, positive selection associated 1 Neighboring gene TAR (HIV) RNA binding protein 2 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 2 Neighboring gene uncharacterized LOC137496012 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC327541

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198875.2 → NP_942576.2  uncharacterized protein LOC327541

      Status: VALIDATED

      Source sequence(s)
      CU639408, CU652704
      UniProtKB/TrEMBL
      A0A8M1P9A1, F1Q9S3
      Related
      ENSDARP00000021426.5, ENSDART00000011970.7
      Conserved Domains (2) summary
      TIGR00927
      Location:332 → 589
      2A1904; K+-dependent Na+/Ca+ exchanger
      TIGR02168
      Location:97 → 403
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      46736243..46742451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools