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    si:ch211-262i1.5 si:ch211-262i1.5 [ Danio rerio (zebrafish) ]

    Gene ID: 567573, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch211-262i1.5provided by ZNC
    Official Full Name
    si:ch211-262i1.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3152
    See related
    Ensembl:ENSDARG00000070059 AllianceGenome:ZFIN:ZDB-GENE-030131-3152
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc28f08; wu:fc28f08
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-262i1.5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (14312259..14319063)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (14254575..14261329)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene si:ch211-262i1.4 Neighboring gene si:ch211-262i1.2 Neighboring gene polypyrimidine tract binding protein 1b Neighboring gene family with sequence similarity 174 member C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity. Clouaire T, et al. Proc Natl Acad Sci U S A, 2005 May 10. PMID 15863623, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-262i1.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      14312259..14319063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479951.2 → XP_021335626.1  uncharacterized protein si:ch211-262i1.5

      UniProtKB/TrEMBL
      A0A8M9QIF0, E7EZT8
      Related
      ENSDARP00000093294.3, ENSDART00000102518.5
      Conserved Domains (3) summary
      pfam05485
      Location:19 → 97
      THAP; THAP domain
      pfam13613
      Location:241 → 291
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
      cl21562
      Location:319 → 446
      DDE_Tnp_4; DDE superfamily endonuclease

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394806.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      222571..229357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690871.8 → XP_695963.3  uncharacterized protein si:ch211-262i1.5

      UniProtKB/TrEMBL
      A0A8N7T7U7
      Conserved Domains (3) summary
      pfam05485
      Location:19 → 97
      THAP; THAP domain
      pfam13613
      Location:241 → 291
      HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
      cl21562
      Location:319 → 446
      DDE_Tnp_4; DDE superfamily endonuclease
    Nucleotide Protein Strain
    Heading Accession and Version

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