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    ctdspl3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3 [ Danio rerio (zebrafish) ]

    Gene ID: 571337, updated on 14-Nov-2024

    Summary

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    Official Symbol
    ctdspl3provided by ZNC
    Official Full Name
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141215-56
    See related
    Ensembl:ENSDARG00000089646 AllianceGenome:ZFIN:ZDB-GENE-141215-56
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-248i1.4
    Summary
    Predicted to enable phosphatase activity. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See ctdspl3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (5817234..5836290)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (5819971..5839031)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene R3H domain containing 4 Neighboring gene AT-rich interactive domain 3A Neighboring gene NADH:ubiquinone oxidoreductase core subunit S7 Neighboring gene guanidinoacetate N-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative transcriptomic profiling of hydrogen peroxide signaling networks in zebrafish and human keratinocytes: Implications toward conservation, migration and wound healing. Lisse TS, et al. Sci Rep, 2016 Feb 5. PMID 26846883, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoprotein phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CTD small phosphatase-like protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      5817234..5836290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479700.2 → XP_021335375.1  CTD small phosphatase-like protein 3

      UniProtKB/TrEMBL
      A0A8N7TFT8, E7F3H1
      Related
      ENSDARP00000105921.1, ENSDART00000126084.3
      Conserved Domains (2) summary
      pfam03031
      Location:183 → 343
      NIF; NLI interacting factor-like phosphatase
      cl26464
      Location:19 → 182
      Atrophin-1; Atrophin-1 family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394801.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      23253..42309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_694917.8 → XP_700009.3  CTD small phosphatase-like protein 3

      UniProtKB/TrEMBL
      A0A8N7TFT8, E7F3H1
      Conserved Domains (2) summary
      pfam03031
      Location:183 → 343
      NIF; NLI interacting factor-like phosphatase
      cl26464
      Location:19 → 182
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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