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    si:ch211-266i6.3 si:ch211-266i6.3 [ Danio rerio (zebrafish) ]

    Gene ID: 568826, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-266i6.3provided by ZNC
    Official Full Name
    si:ch211-266i6.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5420
    See related
    Ensembl:ENSDARG00000086112 AllianceGenome:ZFIN:ZDB-GENE-030131-5420
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd16g01; wu:fd16g01; wu:fi42a10
    Summary
    Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to be located in cytoplasm. Predicted to be active in microtubule cytoskeleton. Orthologous to human CKAP2 (cytoskeleton associated protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-266i6.3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (32050936..32058292)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (32107046..32114436)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene forkhead box O1 b Neighboring gene LHFPL tetraspan subfamily member 6 Neighboring gene si:dkey-250d21.1 Neighboring gene THAP domain containing 12a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in negative regulation of microtubule depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    cytoskeleton-associated protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      32050936..32058292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692182.8 → XP_697274.2  cytoskeleton-associated protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8N7T866, E7F392
      Related
      ENSDARP00000117930.1, ENSDART00000137373.2
      Conserved Domains (1) summary
      pfam15297
      Location:259 → 594
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    2. XM_021479399.2 → XP_021335074.1  cytoskeleton-associated protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QCL0
      Conserved Domains (1) summary
      pfam15297
      Location:256 → 591
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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