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    • Showing Current items.

    zgc:77056 zgc:77056 [ Danio rerio (zebrafish) ]

    Gene ID: 327040, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:77056provided by ZNC
    Official Full Name
    zgc:77056provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5248
    See related
    Ensembl:ENSDARG00000029615 AllianceGenome:ZFIN:ZDB-GENE-030131-5248
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa20b03; wu:fa20b03
    Summary
    Orthologous to human KIAA1143 (KIAA1143). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zgc:77056 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (39242300..39246079)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (39292268..39296047)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 3a Neighboring gene transmembrane protein 42a Neighboring gene glycerol-3-phosphate dehydrogenase 1 like Neighboring gene oxysterol binding protein-like 10b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Syntabulin, a motor protein linker, controls dorsal determination. Nojima H, et al. Development, 2010 Mar. PMID 20150281
    2. A versatile gene trap to visualize and interrogate the function of the vertebrate proteome. Trinh le A, et al. Genes Dev, 2011 Nov 1. PMID 22056673, Free PMC Article
    3. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein KIAA1143 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212698.2 → NP_997863.2  uncharacterized protein KIAA1143 homolog

      Status: VALIDATED

      Source sequence(s)
      BC066704, CO925251
      UniProtKB/TrEMBL
      A0A8M1PHK9, F1Q4N6
      Related
      ENSDARP00000093286.4, ENSDART00000102510.6
      Conserved Domains (1) summary
      pfam15377
      Location:6 → 142
      DUF4604; Domain of unknown function (DUF4604)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      39242300..39246079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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