zgc:113054 zgc:113054 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:113054provided by ZNC
Official Full Name: zgc:113054provided by ZNC
Primary source: ZFIN:ZDB-GENE-050320-9
See related: Ensembl:ENSDARG00000053483 AllianceGenome:ZFIN:ZDB-GENE-050320-9
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fd55e12
Summary: Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within fatty acid metabolic process and methylation. Is expressed in several structures, including digestive system; epidermis; immature eye; notochord; and ovary. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (43450305..43474757)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (43452769..43477217)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables O-methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IBA Inferred from Biological aspect of Ancestor more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within fatty acid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within methylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC541322

Names: MT-Ox; dhrs10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013450.1 → NP_001013468.1 uncharacterized protein LOC541322

See identical proteins and their annotated locations for NP_001013468.1

Status: PREDICTED

Source sequence(s)

BC090471

UniProtKB/TrEMBL

A0A8M1N4N4, Q5BLE6

Related

ENSDARP00000070003.4, ENSDART00000075521.5

Conserved Domains (4) summary

COG4122
Location:40 → 270

YrrM; Predicted O-methyltransferase YrrM [General function prediction only]

PRK05653
Location:303 → 550

fabG; 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

cl17173
Location:59 → 270

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

cl21454
Location:299 → 548

NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

43450305..43474757

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021476863.1 → XP_021332538.1 uncharacterized protein LOC541322 isoform X1

UniProtKB/TrEMBL

A0A8M9PZQ3

Conserved Domains (2) summary

cl17173
Location:1 → 166

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

cl25409
Location:195 → 444

SDR; Short-chain dehydrogenases/reductases (SDR)