U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    grna.1 granulin a, tandem duplicate 1 [ Danio rerio (zebrafish) ]

    Gene ID: 553977, updated on 14-Nov-2024

    Summary

    Official Symbol
    grna.1provided by ZNC
    Official Full Name
    granulin a, tandem duplicate 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060103-1
    See related
    Ensembl:ENSDARG00000089362 AllianceGenome:ZFIN:ZDB-GENE-060103-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    grn1; zgc:136318
    Summary
    Predicted to be active in extracellular region. Is expressed in several structures, including digestive system; epidermis; gill; heart; and pleuroperitoneal region. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See grna.1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (40186677..40192168, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (40599557..40605048, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene immune-related, lectin-like receptor 4 Neighboring gene RNA binding motif protein 48 Neighboring gene calaxin Neighboring gene granulin antisense Neighboring gene granulin a, tandem duplicate 2 Neighboring gene cyclin dependent kinase 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020802.2NP_001018638.2  granulin 1 precursor

      See identical proteins and their annotated locations for NP_001018638.2

      Status: VALIDATED

      Source sequence(s)
      BC116498, BX510986, EH455318
      UniProtKB/TrEMBL
      A0A2R8QC28, A8E5C4, Q1LWZ1
      Related
      ENSDARP00000051971.6, ENSDART00000051972.7
      Conserved Domains (1) summary
      smart00277
      Location:3989
      GRAN; Granulin

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      40186677..40192168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)