U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:153990 zgc:153990 [ Danio rerio (zebrafish) ]

    Gene ID: 768125, updated on 2-Nov-2024

    Summary

    Official Symbol
    zgc:153990provided by ZNC
    Official Full Name
    zgc:153990provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-144
    See related
    Ensembl:ENSDARG00000053716 AllianceGenome:ZFIN:ZDB-GENE-061013-144
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See zgc:153990 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (36666715..36675023)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36066562..36074870)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene alkB homolog 6 Neighboring gene calpain, small subunit 1 a Neighboring gene deltaB Neighboring gene uncharacterized LOC103911090

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC768125

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077271.1NP_001070739.1  uncharacterized protein LOC768125

      See identical proteins and their annotated locations for NP_001070739.1

      Status: PREDICTED

      Source sequence(s)
      BX005407
      UniProtKB/TrEMBL
      Q08BC2, Q1LYD1
      Related
      ENSDARP00000088456.4, ENSDART00000097686.5
      Conserved Domains (1) summary
      pfam13873
      Location:1993
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      36666715..36675023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)