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    rex1bd required for excision 1-B domain containing [ Danio rerio (zebrafish) ]

    Gene ID: 564601, updated on 2-Nov-2024

    Summary

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    Official Symbol
    rex1bdprovided by ZNC
    Official Full Name
    required for excision 1-B domain containingprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081031-40
    See related
    Ensembl:ENSDARG00000073867 AllianceGenome:ZFIN:ZDB-GENE-081031-40
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7139388; si:ch211-87h14.3
    Summary
    Orthologous to human REX1BD (required for excision 1-B domain containing). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rex1bd in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (21168587..21176282, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (21143609..21151304, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 59-like Neighboring gene uncharacterized LOC137488924 Neighboring gene cytokine receptor-like factor 1b Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA arginine (anticodon CCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    required for excision 1-B domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256159.1 → NP_001243088.1  required for excision 1-B domain-containing protein

      Status: VALIDATED

      Source sequence(s)
      CU463178
      UniProtKB/TrEMBL
      A0A8M1NZD1, B8JL57
      Related
      ENSDARP00000102057.3, ENSDART00000112839.4
      Conserved Domains (1) summary
      pfam14966
      Location:28 → 123
      DNA_repr_REX1B; DNA repair REX1-B

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      21168587..21176282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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