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    pmp22b peripheral myelin protein 22b [ Danio rerio (zebrafish) ]

    Gene ID: 678607, updated on 2-Nov-2024

    Summary

    Official Symbol
    pmp22bprovided by ZNC
    Official Full Name
    peripheral myelin protein 22bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060421-4337
    See related
    Ensembl:ENSDARG00000060457 AllianceGenome:ZFIN:ZDB-GENE-060421-4337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    id:ibd2630; wu:fb81f09; zgc:136919
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in notochord; otic placode; otic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies. Orthologous to human PMP22 (peripheral myelin protein 22). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See pmp22b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (37275333..37299671, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (37100591..37124929, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1b Neighboring gene uncharacterized LOC108191741 Neighboring gene uncharacterized LOC137496774 Neighboring gene tektin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC136919

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    peripheral myelin protein 22b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040355.2NP_001035445.1  peripheral myelin protein 22b

      See identical proteins and their annotated locations for NP_001035445.1

      Status: VALIDATED

      Source sequence(s)
      BC154259, CR293521
      UniProtKB/TrEMBL
      A8KBV6, Q1RLQ8
      Related
      ENSDARP00000079636.4, ENSDART00000085201.5
      Conserved Domains (1) summary
      cl21598
      Location:1148
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      37275333..37299671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)