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    NATD1 N-acetyltransferase domain containing 1 [ Homo sapiens (human) ]

    Gene ID: 256302, updated on 17-Sep-2024

    Summary

    Official Symbol
    NATD1provided by HGNC
    Official Full Name
    N-acetyltransferase domain containing 1provided by HGNC
    Primary source
    HGNC:HGNC:30770
    See related
    Ensembl:ENSG00000274180 AllianceGenome:HGNC:30770
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Gtlf3b; C17orf103
    Expression
    Ubiquitous expression in fat (RPKM 12.3), bone marrow (RPKM 8.0) and 24 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See NATD1 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (21238870..21253410, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (21187775..21202316, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (21142183..21156722, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11881 Neighboring gene TMEM11 divergent transcript Neighboring gene RNA, 7SL, cytoplasmic 426, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21142166-21142910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:21143656-21144400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21147379-21148121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21152353-21152854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8315 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21166079-21166648 Neighboring gene eukaryotic translation initiation factor 1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11882 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8317 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21187095-21187595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11884 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:21190872-21192071 Neighboring gene mitogen-activated protein kinase kinase 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21200045-21200584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21200745-21201246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21201247-21201746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:21212475-21212974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21215299-21215916

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: TMEM11

    Clone Names

    • MGC33894, DKFZp762H185, DKFZp761I1115

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    protein NATD1
    Names
    N-acetyltransferase domain-containing protein 1
    gene trap locus F3b
    protein GTLF3B
    transcript expressed during hematopoiesis 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_152914.3NP_690878.2  protein NATD1

      See identical proteins and their annotated locations for NP_690878.2

      Status: VALIDATED

      Source sequence(s)
      AC087294, AK126856
      UniProtKB/Swiss-Prot
      A8MWQ7, B3KX70, Q8N6N6
      Related
      ENSP00000478388.1, ENST00000611551.1
      Conserved Domains (1) summary
      pfam14542
      Location:29103
      Acetyltransf_CG; GCN5-related N-acetyl-transferase

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      21238870..21253410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      21187775..21202316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)