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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001271534.3 → NP_001258463.1 cell adhesion molecule DSCAM isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform CHD2-42.
- Source sequence(s)
-
AF023449, AF043945, AF064862, AF289030, BM684380
- UniProtKB/TrEMBL
-
Q59GH3
- Conserved Domains (8) summary
-
- cd00096
Location:424 → 493
- Ig; Immunoglobulin domain
- cd05734
Location:707 → 784
- Ig7_DSCAM; Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
- smart00408
Location:239 → 300
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:44 → 113
- IG; Immunoglobulin
- smart00410
Location:236 → 310
- IG_like; Immunoglobulin like
- cd00063
Location:1380 → 1470
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:690 → 784
- I-set; Immunoglobulin I-set domain
- cl11960
Location:802 → 889
- Ig; Immunoglobulin domain
-
NM_001389.5 → NP_001380.2 cell adhesion molecule DSCAM isoform CHD2-42 precursor
See identical proteins and their annotated locations for NP_001380.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (CHD2-42).
- Source sequence(s)
-
AF043945, AF064862, AF217525, BE503065, BM684380
- Consensus CDS
-
CCDS42929.1
- UniProtKB/Swiss-Prot
- O60468, O60469
- UniProtKB/TrEMBL
-
Q59GH3
- Related
- ENSP00000383303.1, ENST00000400454.6
- Conserved Domains (8) summary
-
- cd05734
Location:707 → 784
- Ig_DSCAM; Immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
- smart00408
Location:518 → 575
- IGc2; Immunoglobulin C-2 Type
- cd00063
Location:1380 → 1470
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:235 → 310
- I-set; Immunoglobulin I-set domain
- pfam13927
Location:407 → 488
- Ig_3; Immunoglobulin domain
- cd00096
Location:1303 → 1369
- Ig; Immunoglobulin domain
- cl11960
Location:802 → 889
- Ig; Immunoglobulin domain
- cl28434
Location:596 → 686
- I-set; Immunoglobulin I-set domain
RNA
-
NR_073202.3 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF023450, AF043945, AF064862, AF217525, BM684380
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9 Reference GRCh38.p14 Primary Assembly
- Range
-
40010999..40847158 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017028281.2 → XP_016883770.1 cell adhesion molecule DSCAM isoform X1
- UniProtKB/TrEMBL
-
Q8WY19
- Related
- ENSP00000478698.1, ENST00000617870.4
- Conserved Domains (7) summary
-
- cd00096
Location:188 → 257
- Ig; Immunoglobulin domain
- cd05734
Location:471 → 548
- Ig7_DSCAM; Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
- smart00408
Location:3 → 64
- IGc2; Immunoglobulin C-2 Type
- smart00410
Location:1 → 74
- IG_like; Immunoglobulin like
- cd00063
Location:1144 → 1234
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:454 → 548
- I-set; Immunoglobulin I-set domain
- cl11960
Location:566 → 653
- Ig; Immunoglobulin domain
Reference GRCh38.p14 PATCHES
Genomic
-
NW_025791814.1 Reference GRCh38.p14 PATCHES
- Range
-
150307..986812 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333308.1 → XP_054189283.1 cell adhesion molecule DSCAM isoform X1
- UniProtKB/TrEMBL
-
Q8WY19
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1 Alternate T2T-CHM13v2.0
- Range
-
38398213..39235595 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054324369.1 → XP_054180344.1 cell adhesion molecule DSCAM isoform X2
- UniProtKB/TrEMBL
-
A0A087WUI7