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    LOC105379499 uncharacterized LOC105379499 [ Homo sapiens (human) ]

    Gene ID: 105379499, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC105379499
    Gene description
    uncharacterized LOC105379499
    See related
    Ensembl:ENSG00000280018
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CH507-24F1.1; CH507-145C22.1; CH507-154B10.1; CH507-154B10.2
    Expression
    Ubiquitous expression in prostate (RPKM 1.5), skin (RPKM 0.9) and 25 other tissues See more
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    Genomic context

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    See LOC105379499 in Genome Data Viewer
    Location:
    21p12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (6986241..6997774, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (2852777..2864373, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 Unlocalized Scaffold NT_113901.1 (137958..149494)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene telomeric repeat-binding factor 1-like Neighboring gene ribosome biogenesis protein SLX9 homolog Neighboring gene carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like Neighboring gene uncharacterized LOC102724843 Neighboring gene CTBP2 pseudogene 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188603.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU634019
      Related
      ENST00000763281.1

    2. NR_188604.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU634019
      Related
      ENST00000623165.4

    3. NR_188605.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU634019
      Related
      ENST00000763279.1

    4. NR_188606.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU634019
      Related
      ENST00000763278.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      6986241..6997774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      2852777..2864373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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