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    pld7 phospholipase D family, member 7 [ Danio rerio (zebrafish) ]

    Gene ID: 558442, updated on 2-Nov-2024

    Summary

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    Official Symbol
    pld7provided by ZNC
    Official Full Name
    phospholipase D family, member 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030219-75
    See related
    Ensembl:ENSDARG00000061845 AllianceGenome:ZFIN:ZDB-GENE-030219-75
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    id:ibd3344; si:dkeyp-110e4.6
    Summary
    Predicted to enable catalytic activity. Predicted to be located in membrane. Is expressed in axial chorda mesoderm. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See pld7 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (26426994..26437368, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (26128876..26138922, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 9 Neighboring gene lectin, mannose-binding 2 Neighboring gene G protein-coupled receptor 137 Neighboring gene synovial apoptosis inhibitor 1, synoviolin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase D4; 5'-3' exonuclease PLD3
    XP_005173237.1
    XP_068069441.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      26426994..26437368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213340.1 → XP_068069441.1  5'-3' exonuclease PLD3 isoform X2

    2. XM_005173180.5 → XP_005173237.1  5'-3' exonuclease PLD3 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKH9, E9QJQ5
      Related
      ENSDARP00000083110.4, ENSDART00000088677.6
      Conserved Domains (2) summary
      PHA02820
      Location:361 → 768
      PHA02820; phospholipase-D-like protein; Provisional
      cl15239
      Location:586 → 762
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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