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    fam210aa family with sequence similarity 210 member Aa [ Danio rerio (zebrafish) ]

    Gene ID: 562734, updated on 2-Nov-2024

    Summary

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    Official Symbol
    fam210aaprovided by ZNC
    Official Full Name
    family with sequence similarity 210 member Aaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5627
    See related
    Ensembl:ENSDARG00000035985 AllianceGenome:ZFIN:ZDB-GENE-030131-5627
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi06g08; wu:fi06g08; si:ch211-105d11.2
    Summary
    Predicted to be located in membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210A (family with sequence similarity 210 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See fam210aa in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (12631329..12648408, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (12711801..12728880, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene SEH1-like (S. cerevisiae) Neighboring gene low density lipoprotein receptor class A domain containing 4a Neighboring gene RNA (guanine-7-) methyltransferase Neighboring gene uncharacterized LOC137488483

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C18orf19 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044994.2 → NP_001038459.1  uncharacterized protein C18orf19 homolog A

      See identical proteins and their annotated locations for NP_001038459.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133959
      UniProtKB/Swiss-Prot
      A3KNQ7, Q1MTD4
      Related
      ENSDARP00000094467.3, ENSDART00000103692.5
      Conserved Domains (3) summary
      pfam02987
      Location:188 → 231
      LEA_4; Late embryogenesis abundant protein
      pfam01442
      Location:187 → 236
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam06916
      Location:83 → 170
      DUF1279; Protein of unknown function (DUF1279)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      12631329..12648408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1MTD4.1 GenPept UniProtKB/Swiss-Prot:Q1MTD4

    Gene LinkOut

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