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    or40a1 odorant receptor, family 40, subfamily A, member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 80368, updated on 2-Nov-2024

    Summary

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    Official Symbol
    or40a1provided by ZNC
    Official Full Name
    odorant receptor, family 40, subfamily A, member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-010308-21
    See related
    Ensembl:ENSDARG00000041032 AllianceGenome:ZFIN:ZDB-GENE-010308-21
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    or9; ZF1A; or9a; zor9; or7.1; orzf1a; olfr7.1; or107-1; or15.39
    Summary
    Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in olfactory epithelium; olfactory receptor cell; and olfactory rosette. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See or40a1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (31344481..31345885)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (31463740..31465173)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene odorant receptor 15.37 Neighboring gene odorant receptor, family 71, subfamily AL, member 2 Neighboring gene odorant receptor, family 42, subfamily E, member 1 Neighboring gene odorant receptor, family 42, subfamily E, member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Ontogeny of odorant receptor gene expression in zebrafish, Danio rerio. Byrd CA, et al. J Neurobiol, 1996 Apr. PMID 8656210
    2. A choice behavior for morphine reveals experience-dependent drug preference and underlying neural substrates in developing larval zebrafish. Bretaud S, et al. Neuroscience, 2007 May 25. PMID 17428610
    3. Patterned Arrangements of Olfactory Receptor Gene Expression in Zebrafish are Established by Radial Movement of Specified Olfactory Sensory Neurons. Bayramli X, et al. Sci Rep, 2017 Jul 17. PMID 28717156, Free PMC Article
    4. At the Root of T2R Gene Evolution: Recognition Profiles of Coelacanth and Zebrafish Bitter Receptors. Behrens M, et al. Genome Biol Evol, 2021 Jan 7. PMID 33355666, Free PMC Article
    5. Gene duplication, conservation, and divergence of activating transcription factor 5 gene in zebrafish. Zhu H, et al. J Exp Zool B Mol Dev Evol, 2022 Jul. PMID 35226401

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables olfactory receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables olfactory receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    odorant receptor 107-1
    Names
    Dr3OR15.30
    fZOR9
    odor receptor 1A
    odorant receptor 9
    odorant receptor 9a
    odorant receptor, family 7, member 1
    odorant receptor, family D, subfamily 107, member 1
    olfactory receptor protein 7.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131750.1 → NP_571825.1  odorant receptor 107-1

      See identical proteins and their annotated locations for NP_571825.1

      Status: PROVISIONAL

      Source sequence(s)
      AF112374
      UniProtKB/TrEMBL
      Q9I8Y8
      Related
      ENSDARP00000060124.4, ENSDART00000060125.6
      Conserved Domains (2) summary
      pfam00001
      Location:94 → 345
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:84 → 362
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      31344481..31345885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291687.4 → XP_009289962.1  odorant receptor 107-1 isoform X1

      See identical proteins and their annotated locations for XP_009289962.1

      UniProtKB/TrEMBL
      Q2MDD8, Q2PRD4
      Conserved Domains (2) summary
      pfam00001
      Location:46 → 297
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:36 → 314
      7tm_4; Olfactory receptor

    2. XM_009291685.4 → XP_009289960.1  odorant receptor 107-1 isoform X1

      See identical proteins and their annotated locations for XP_009289960.1

      UniProtKB/TrEMBL
      Q2MDD8, Q2PRD4
      Related
      ENSDARP00000116654.1, ENSDART00000146695.2
      Conserved Domains (2) summary
      pfam00001
      Location:46 → 297
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:36 → 314
      7tm_4; Olfactory receptor
    Nucleotide Protein Strain
    Heading Accession and Version

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