cntn1b contactin 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cntn1bprovided by ZNC
Official Full Name: contactin 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041210-236
See related: Ensembl:ENSDARG00000045685 AllianceGenome:ZFIN:ZDB-GENE-041210-236
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-240a12.2
Summary: Predicted to enable ATP binding activity. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (13733838..13756711)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (13734989..13757862)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Zebrafish cntn1b mutants showed abnormal swimming behaviors.
Title: Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in neuron projection	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: contactin 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001014814.1 → NP_001014814.1 contactin 1b precursor

See identical proteins and their annotated locations for NP_001014814.1

Status: PROVISIONAL

Source sequence(s)

AY301281

UniProtKB/TrEMBL

Q597F7

Related

ENSDARP00000067165.3, ENSDART00000067166.6

Conserved Domains (6) summary

cd04969
Location:434 → 505

Ig5_Contactin_like; Fifth Ig domain of contactin

smart00410
Location:343 → 412

IG_like; Immunoglobulin like

cd00063
Location:608 → 708

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam07679
Location:42 → 135

I-set; Immunoglobulin I-set domain

pfam00041
Location:817 → 903

fn3; Fibronectin type III domain

cl11960
Location:41 → 133

Ig; Immunoglobulin domain