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    prrc2c proline-rich coiled-coil 2C [ Danio rerio (zebrafish) ]

    Gene ID: 407633, updated on 9-Dec-2024

    Summary

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    Official Symbol
    prrc2cprovided by ZNC
    Official Full Name
    proline-rich coiled-coil 2Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-156
    See related
    Ensembl:ENSDARG00000057583 AllianceGenome:ZFIN:ZDB-GENE-081104-156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-191d7.6
    Summary
    Predicted to be involved in cell differentiation. Orthologous to human PRRC2C (proline rich coiled-coil 2C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See prrc2c in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (15021747..15080639, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (15125865..15181147, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 4 Neighboring gene myocilin Neighboring gene si:dkey-239i20.2 Neighboring gene flavin containing dimethylaniline monoxygenase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution and genomic organization of muscle microRNAs in fish genomes. Nachtigall PG, et al. BMC Evol Biol, 2014 Sep 25. PMID 25253178, Free PMC Article
    2. Evolutionary evidence of tumor necrosis factor super family members in the Japanese pufferfish (Takifugu rubripes): Comprehensive genomic identification and expression analysis. Biswas G, et al. Mar Genomics, 2015 Aug. PMID 25792259
    3. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article
    4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein BAT2-like 2; protein PRRC2C
    Names
    Bat2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      15021747..15080639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294615.4 → XP_009292890.1  protein PRRC2C isoform X1

      UniProtKB/TrEMBL
      A0A286YBN1, A0A8M3AKQ3
      Related
      ENSDARP00000144610.2, ENSDART00000175585.2
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 165
      BAT2_N; BAT2 N-terminus

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395065.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      671..35123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473359.2 → XP_021329034.1  protein PRRC2C isoform X2

      UniProtKB/TrEMBL
      A0A8M9PW46
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 165
      BAT2_N; BAT2 N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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