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    LOC104941609 tubulin beta-1 chain [ Notothenia coriiceps (black rockcod) ]

    Gene ID: 104941609, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC104941609
    Gene description
    tubulin beta-1 chain
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Notothenia coriiceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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    Genomic context

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    See LOC104941609 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011336226.1 (28899..31802)

    NW_011336226.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A11 Neighboring gene aspartate aminotransferase, cytoplasmic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011336226.1 Unplaced Scaffold Reference NC01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cold adaptation of microtubule assembly and dynamics. Structural interpretation of primary sequence changes present in the alpha- and beta-tubulins of Antarctic fishes. Detrich HW 3rd, et al. J Biol Chem, 2000 Nov 24. PMID 10956651
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin beta-1 chain
    Names
    beta tubulin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001303286.1 → NP_001290215.1  tubulin beta-1 chain

      See identical proteins and their annotated locations for NP_001290215.1

      Status: PROVISIONAL

      Source sequence(s)
      AF255554
      UniProtKB/TrEMBL
      Q9DFT6
      Conserved Domains (2) summary
      PLN00220
      Location:1 → 430
      PLN00220; tubulin beta chain; Provisional
      cd02187
      Location:2 → 426
      beta_tubulin; The beta-tubulin family

    RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NC01 Primary Assembly

    Genomic

    1. NW_011336226.1 Reference NC01 Primary Assembly

      Range
      28899..31802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010766735.1 → XP_010765037.1  tubulin beta-1 chain

      Conserved Domains (2) summary
      PLN00220
      Location:1 → 430
      PLN00220; tubulin beta chain; Provisional
      cd02187
      Location:2 → 426
      beta_tubulin; The beta-tubulin family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases