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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032763.2 RefSeqGene
- Range
-
5002..97668
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001267048.2 → NP_001253977.2 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and lacks two alternate in-frame exons in the 5' coding region compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
- Source sequence(s)
-
AL138933, AL356389
- Consensus CDS
-
CCDS58015.1
- UniProtKB/TrEMBL
-
E9PB18
- Related
- ENSP00000434595.1, ENST00000529753.5
- Conserved Domains (1) summary
-
- pfam07562
Location:294 → 330
- NCD3G; Nine Cysteines Domain of family 3 GPCR
-
NM_001284352.2 → NP_001271281.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate 5' exon structure and thus differs in the 5' UTR and 5' coding region, and also uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. These differences cause translation initiation at a downstream start codon and result in an isoform (4) with a shorter N-terminus and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK297221, AL138933, AL356389, BQ101251, CD108482, CD360008
- UniProtKB/TrEMBL
-
B4DLZ2
- Conserved Domains (2) summary
-
- pfam07699
Location:170 → 209
- GCC2_GCC3; GCC2 and GCC3
- cl22855
Location:271 → 319
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
NM_001284353.2 → NP_001271282.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) represents use of an alternate promoter, and thus differs in the 5' UTR and 5' coding region. These differences cause translation initiation at an alternate start codon and result in an isoform (5) with a shorter and distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK122934, AL356389, BQ101251
- UniProtKB/TrEMBL
-
B4DWM4
- Conserved Domains (2) summary
-
- pfam00878
Location:473 → 525
- CIMR; Cation-independent mannose-6-phosphate receptor repeat
- cl22855
Location:35 → 83
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
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NM_020775.5 → NP_065826.3 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform 1).
- Source sequence(s)
-
AL138933, AL356389
- Consensus CDS
-
CCDS794.1
- UniProtKB/Swiss-Prot
- Q08AE6, Q5T5C9, Q5T5D0, Q5T5D1, Q6UXG2, Q9P2M2
- UniProtKB/TrEMBL
-
B4DMI7
- Related
- ENSP00000358955.3, ENST00000369939.8
- Conserved Domains (2) summary
-
- pfam07562
Location:381 → 417
- NCD3G; Nine Cysteines Domain of family 3 GPCR
- cl28643
Location:275 → 414
- VSP; Giardia variant-specific surface protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
109114115..109206781
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011541825.3 → XP_011540127.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X1
- UniProtKB/TrEMBL
-
B4DMI7
- Conserved Domains (3) summary
-
- pfam00878
Location:811 → 863
- CIMR; Cation-independent mannose-6-phosphate receptor repeat
- pfam07699
Location:272 → 311
- GCC2_GCC3; GCC2 and GCC3
- cl22855
Location:373 → 421
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
XM_011541827.3 → XP_011540129.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X3
- UniProtKB/TrEMBL
-
E9PB18
- Conserved Domains (2) summary
-
- pfam00878
Location:761 → 813
- CIMR; Cation-independent mannose-6-phosphate receptor repeat
- cl22855
Location:323 → 371
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
XM_011541826.4 → XP_011540128.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X2
- UniProtKB/TrEMBL
-
B4DMI7
- Related
- ENSP00000393964.2, ENST00000457623.6
- Conserved Domains (3) summary
-
- pfam00878
Location:811 → 863
- CIMR; Cation-independent mannose-6-phosphate receptor repeat
- pfam07699
Location:272 → 311
- GCC2_GCC3; GCC2 and GCC3
- cl22855
Location:373 → 421
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
XM_047426133.1 → XP_047282089.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X4
- UniProtKB/TrEMBL
-
B4DWM4
- Related
-
ENST00000369936.2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
109146975..109239594
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054337818.1 → XP_054193793.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X1
- UniProtKB/TrEMBL
-
B4DMI7
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XM_054337820.1 → XP_054193795.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X3
- UniProtKB/TrEMBL
-
E9PB18
-
XM_054337819.1 → XP_054193794.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X2
- UniProtKB/TrEMBL
-
B4DMI7
-
XM_054337821.1 → XP_054193796.1 endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X4
- UniProtKB/TrEMBL
-
B4DWM4
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001267049.1: Suppressed sequence
- Description
- NM_001267049.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.