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    LINC01029 long intergenic non-protein coding RNA 1029 [ Homo sapiens (human) ]

    Gene ID: 101927715, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01029provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1029provided by HGNC
    Primary source
    HGNC:HGNC:49015
    See related
    Ensembl:ENSG00000265843 AllianceGenome:HGNC:49015
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01029 in Genome Data Viewer
    Location:
    18q23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (77971294..77993727, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (78203119..78225577, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (75683250..75705683, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75465232-75465784 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75474392-75475106 Neighboring gene MPRA-validated peak3188 silencer Neighboring gene VISTA enhancer hs1020 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:75535169-75536368 Neighboring gene VISTA enhancer hs1186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75577351-75577852 Neighboring gene RNA, 5S ribosomal pseudogene 461 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75609611-75610121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75611971-75612487 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75617943-75618714 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:75629975-75630209 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50500 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75682747-75683315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75714815-75715343 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75717895-75718640 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75718641-75719385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75791151-75791652 Neighboring gene RNA, U6 small nuclear 655, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842390-75842890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842891-75843391 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:75844334-75845533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75848151-75848652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:75898411-75899054 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75899055-75899698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75899699-75900342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75934781-75935281 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:75936086-75937285 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75967979-75968517 Neighboring gene VISTA enhancer hs634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76027952-76028452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76028453-76028953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76056703-76057204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76057205-76057704 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:76254093-76255292 Neighboring gene uncharacterized LOC105372219

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104127.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134978
      Related
      ENST00000668585.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      77971294..77993727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      78203119..78225577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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