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    LOC4347000 protein TIFY 6b-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347000, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347000
    Gene description
    protein TIFY 6b-like
    Locus tag
    OSNPB_090401300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    JAZ4; OsJAZ4; OsJAZ8; TIFY6B; OsTIFY6b; OsJ_29291
    Expression
    Broad expression in roots before flowering (RPKM 161.9), flowers (RPKM 59.7) and 5 other tissues See more
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    Genomic context

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    See LOC4347000 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14056100..14060320, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB20 Neighboring gene ABC transporter G family member 17 Neighboring gene TPR repeat-containing thioredoxin TDX-like Neighboring gene plant UBX domain-containing protein 2 Neighboring gene protein XRI1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4. He Y, et al. Plant Cell, 2020 Sep. PMID 32586913, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4.
      Title: The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 6b
    Names
    Jasmonate ZIM domain-containing protein 4
    LOC_Os09g23660
    P0650H04.35-1
    P0650H04.35-2
    P0650H04.35-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403749.1 → NP_001390678.1  protein TIFY 6b

      Status: VALIDATED

      Source sequence(s)
      AK065170, CB659310, CB659311, CI430203, CI664267
      UniProtKB/Swiss-Prot
      A0A0P0XLY1, Q6ES51

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14056100..14060320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756916.2 → XP_015612402.1  protein TIFY 6b

      UniProtKB/Swiss-Prot
      Q6ES51
      Conserved Domains (2) summary
      pfam06200
      Location:188 → 221
      tify; tify domain
      pfam09425
      Location:335 → 359
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ES51.1 GenPept UniProtKB/Swiss-Prot:Q6ES51

    Gene LinkOut

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