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    LOC4349255 uncharacterized LOC4349255 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349255, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349255
    Gene description
    uncharacterized LOC4349255
    Locus tag
    OSNPB_100540300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 49.7), flower buds (RPKM 36.8) and 6 other tissues See more
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    Genomic context

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    See LOC4349255 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21761181..21767164)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21066730..21074879)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial Neighboring gene uncharacterized LOC4349254 Neighboring gene uncharacterized LOC9270734 Neighboring gene uncharacterized LOC107279142 Neighboring gene uncharacterized LOC136353733

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349255
    Names
    Os10g0540300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21761181..21767164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758311.2 → XP_015613797.1  uncharacterized protein LOC4349255

      UniProtKB/TrEMBL
      A0A5S6R895, B9G6T3, Q7XCM6, Q9FRJ7
      Conserved Domains (1) summary
      pfam12274
      Location:157 → 241
      DUF3615; Protein of unknown function (DUF3615)
    Nucleotide Protein
    Heading Accession and Version

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