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    LOC4341232 arogenate dehydrogenase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341232, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341232
    Gene description
    arogenate dehydrogenase 2, chloroplastic
    Locus tag
    OSNPB_060542200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 4.7), flower buds (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4341232 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21257870..21260852)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20400335..20403403)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266235 Neighboring gene polyadenylate-binding protein-interacting protein 8 Neighboring gene heavy metal-associated isoprenylated plant protein 29 Neighboring gene F-box only protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables arogenate dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prephenate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prephenate dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tyrosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arogenate dehydrogenase 2, chloroplastic
    Names
    B1068H08.10
    Os06g0542200
    putative arogenate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21257870..21260852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786457.3 → XP_015641943.1  arogenate dehydrogenase 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WXX8, B8B3E0, Q0DBQ2, Q5Z6Y1
      Conserved Domains (1) summary
      PLN02256
      Location:74 → 341
      PLN02256; arogenate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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