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    RLK10 lysM domain receptor-like kinase 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270778, updated on 1-Aug-2024

    Summary

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    Gene symbol
    RLK10
    Gene description
    lysM domain receptor-like kinase 10
    Locus tag
    OSNPB_090511000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CERK1; OsCERK1; RLCK276; OsJ_29979; OsRLCK276
    Expression
    Ubiquitous expression in roots before flowering (RPKM 12.8), roots after flowering (RPKM 11.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24272253..24277335)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19861217..19866333)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278919 Neighboring gene putative FBD-associated F-box protein At1g61330 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene uncharacterized LOC9268395

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Shimizu T, et al. Plant J, 2010 Oct. PMID 21070404, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane receptor protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysM domain receptor-like kinase 10
    Names
    LOC_Os09g33630
    LysM RLK
    LysM RLK1
    LysM domain receptor-like kinase 1
    LysM receptor-like kinase
    LysM-containing receptor-like kinase 1
    Os09g0511000
    lysM-containing receptor-like kinase 10
    osLysM-RLK10
    receptor-like cytoplasmic kinase 276
    NP_001391829.1
    XP_015611967.1
    XP_066159999.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404900.1 → NP_001391829.1  lysM domain receptor-like kinase 10 precursor

      Status: VALIDATED

      Source sequence(s)
      AB510402, CI135564, CI334014, CI638432
      UniProtKB/Swiss-Prot
      A0A0P0XNY3, A0A0P0XPR6, A3C0J5, B7E6S3, C7J6F9, D7UPN3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24272253..24277335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756481.3 → XP_015611967.1  lysM domain receptor-like kinase 10 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:331 → 593
      PKc_like; Protein Kinases, catalytic domain

    2. XM_066303902.1 → XP_066159999.1  lysM domain receptor-like kinase 10 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0XNY3, A0A0P0XPR6, A3C0J5, B7E6S3, C7J6F9, D7UPN3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D7UPN3.1 GenPept UniProtKB/Swiss-Prot:D7UPN3

    Gene LinkOut

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