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    LOC4340250 RING-H2 finger protein ATL46 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340250, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4340250
    Gene description
    RING-H2 finger protein ATL46
    Locus tag
    OSNPB_060167200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.0), flowers (RPKM 1.5) and 6 other tissues See more
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    Genomic context

    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3550955..3553488, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3388090..3390798, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing-splicing factor 8A Neighboring gene AP-1 complex subunit gamma-2 Neighboring gene dehydrodolichyl diphosphate synthase CPT3 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56130

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    RING-H2 finger protein ATL46
    Names
    OSJNBa0033B09.1
    Os06g0167200
    P0680A03.22
    putative RING finger 1
    putative RING-H2 finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3550955..3553488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788097.3XP_015643583.1  RING-H2 finger protein ATL46

      UniProtKB/TrEMBL
      A2Y9S1, B8B393, Q5VRG7, Q5WAB2
      Conserved Domains (1) summary
      cd16454
      Location:130173
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family