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    LOC4328652 DEAD-box ATP-dependent RNA helicase 41-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328652, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4328652
    Gene description
    DEAD-box ATP-dependent RNA helicase 41-like
    Locus tag
    OSNPB_020201800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 2.9), flower buds (RPKM 2.8) and 6 other tissues See more
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    Genomic context

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    See LOC4328652 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5700169..5708521, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5683603..5697879, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328649 Neighboring gene uncharacterized LOC136355436 Neighboring gene calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 3 Neighboring gene ethylene-responsive transcription factor WIN1 Neighboring gene SPX domain-containing protein 2-like Neighboring gene nuclear pore complex protein NUP205

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 41
    Names
    DEAD-box ATP-dependent RNA helicase 41
    LOC_Os02g10770
    Os02g0201800
    P0419A09.31
    putative DEAD box
    NP_001396321.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409392.1 → NP_001396321.1  dEAD-box ATP-dependent RNA helicase 41

      Status: VALIDATED

      Source sequence(s)
      AK072368, CI352117, CI661617
      UniProtKB/Swiss-Prot
      B7EKP2, Q0E2Z7, Q6Z785

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5700169..5708521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010738991.1 RNA Sequence

    2. XR_001543850.3 RNA Sequence

    3. XR_010738992.1 RNA Sequence

    4. XR_010738993.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E2Z7.2 GenPept UniProtKB/Swiss-Prot:Q0E2Z7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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