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    LOC4345787 glutamate decarboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345787, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345787
    Gene description
    glutamate decarboxylase 1
    Locus tag
    OSNPB_080465800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GAD
    Expression
    Broad expression in mature seeds (RPKM 133.5), flowers (RPKM 107.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23018153..23022386, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22878705..22882991, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351342 Neighboring gene cytochrome P450 76M5-like Neighboring gene DNA polymerase epsilon subunit B-like Neighboring gene probable potassium transporter 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Akama K, et al. Biochim Biophys Acta, 2001 Dec 30. PMID 11779628
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate decarboxylase 1; glutamate decarboxylase
    Names
    Os08g0465800
    P0104B02.16-1
    putative glutamate decarboxylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23018153..23022386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794637.3 → XP_015650123.1  glutamate decarboxylase isoform X1

      UniProtKB/TrEMBL
      A2YW09, Q0J553, Q9AQU4
      Conserved Domains (1) summary
      TIGR01788
      Location:22 → 449
      Glu-decarb-GAD; glutamate decarboxylase

    2. XM_015794638.3 → XP_015650124.1  glutamate decarboxylase 1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XGJ3, B9G1B5, Q6YSB2
      Conserved Domains (1) summary
      TIGR01788
      Location:17 → 445
      Glu-decarb-GAD; glutamate decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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