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    LOC9270250 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270250, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270250
    Gene description
    9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
    Locus tag
    OSNPB_120617400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NCED5
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    Genomic context

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    See LOC9270250 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26984625..26987114)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26268194..26270747)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like Neighboring gene zinc finger protein GIS3-like Neighboring gene uncharacterized LOC4352805 Neighboring gene K(+) efflux antiporter 3, chloroplastic Neighboring gene serine/threonine-protein phosphatase BSL2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice. Huang Y, et al. Plant Sci, 2019 Oct. PMID 31481229
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsNCED5 may regulate plant development and stress resistance through control of abscisic acid (ABA) biosynthesis.
      Title: OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carotenoid dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carotene catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
    Names
    9-cis-epoxycarotenoid dioxygenase 5
    Os12g0617400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26984625..26987114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763221.3 → XP_015618707.1  9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like

      UniProtKB/Swiss-Prot
      A0A0P0YC36, Q5MBR3
      UniProtKB/TrEMBL
      A2ZMS7
      Conserved Domains (1) summary
      PLN02258
      Location:6 → 613
      PLN02258; 9-cis-epoxycarotenoid dioxygenase NCED
    Nucleotide Protein
    Heading Accession and Version

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