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    LOC4328022 uncharacterized LOC4328022 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328022, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4328022
    Gene description
    uncharacterized LOC4328022
    Locus tag
    OSNPB_020106800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1359_D06.29
    Expression
    Ubiquitous expression in flowers (RPKM 36.4), flower buds (RPKM 35.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (403874..409931)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (397351..403457)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL79 Neighboring gene uncharacterized LOC4328021 Neighboring gene salt tolerance receptor-like cytoplasmic kinase 1 Neighboring gene DExH-box ATP-dependent RNA helicase DExH12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328022
    Names
    Os02g0106800
    transmembrane protein 120 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      403874..409931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023249.2 → XP_025879034.1  uncharacterized protein LOC4328022 isoform X1

      UniProtKB/TrEMBL
      B8AGX3
      Conserved Domains (1) summary
      pfam07851
      Location:34 → 343
      TMPIT; TMPIT-like protein

    2. XM_015771607.3 → XP_015627093.1  uncharacterized protein LOC4328022 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VDR6, B8AGX3, B9F1R0, Q6ETC8
      Conserved Domains (1) summary
      pfam07851
      Location:28 → 336
      TMPIT; TMPIT-like protein
    Nucleotide Protein
    Heading Accession and Version

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