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    LOC4350866 HVA22-like protein c [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350866, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4350866
    Gene description
    HVA22-like protein c
    Locus tag
    OSNPB_110602250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip124
    Expression
    Broad expression in flower buds (RPKM 14.7), flowers (RPKM 9.7) and 6 other tissues See more
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    Genomic context

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    See LOC4350866 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25117659..25125206)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23171876..23176327)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 Neighboring gene uncharacterized LOC112936926 Neighboring gene probable tRNA-splicing endonuclease subunit Sen2 Neighboring gene small ribosomal subunit protein uS4y

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    HVA22-like protein c; uncharacterized protein LOC4350866
    Names
    BRI1-KD interacting protein 124
    Os11g0602250
    Os11g0602300
    receptor expression-enhancing protein 3-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25117659..25125206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305431.1 → XP_066161528.1  uncharacterized protein LOC4350866 isoform X2

      UniProtKB/TrEMBL
      A2ZFU6

    2. XM_015761481.3 → XP_015616967.1  HVA22-like protein c isoform X1

      UniProtKB/TrEMBL
      A0A8J8YNZ6, A2ZFU6, A3CCS2, Q0IRS2, Q2R1K3
      Conserved Domains (2) summary
      PTZ00121
      Location:137 → 280
      PTZ00121; MAEBL; Provisional
      pfam03134
      Location:27 → 103
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
    Nucleotide Protein
    Heading Accession and Version

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