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    LOC4342115 chitinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342115, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342115
    Gene description
    chitinase 1-like
    Locus tag
    OSNPB_060726200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CH16; Cht1; RC24; Cht-1; OsChia1a; OsJ_22713; chitinase; P0017G10.4
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    Genomic context

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    See LOC4342115 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31761215..31762564)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30890716..30892060)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like Neighboring gene chitinase 3-like Neighboring gene NAC domain-containing protein 22-like Neighboring gene 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chitinase 1
    Names
    Class I chitinase a
    LOC_Os06g51060
    P0548E04.24
    endochitinase
    pathogenesis related (PR)-3 chitinase 1
    NP_001389875.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402946.1 → NP_001389875.1  chitinase 1

      Status: VALIDATED

      Source sequence(s)
      AU077766, CB672878, CF331229, CI064887, CI664051
      UniProtKB/Swiss-Prot
      A0A0P0X1A6, Q42993, Q42996, Q7DM46

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31761215..31762564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42993.1 GenPept UniProtKB/Swiss-Prot:Q42993

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials