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    LOC4345877 uncharacterized LOC4345877 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345877, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345877
    Gene description
    uncharacterized LOC4345877
    Locus tag
    OSNPB_080485400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 16.9), roots before flowering (RPKM 13.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24128015..24136397)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23987975..23996440)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein EXORDIUM-like 2 Neighboring gene uncharacterized LOC136351620 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 1 Neighboring gene uncharacterized LOC4345879

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nitronate monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345877
    Names
    2-nitropropane dioxygenase-related protein-like
    Os08g0485400
    P0419H09.34-1
    P0481F05.4-1
    nitronate monooxygenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24128015..24136397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027621.2 → XP_025883406.1  uncharacterized protein LOC4345877 isoform X2

      UniProtKB/TrEMBL
      B9G1H1
      Conserved Domains (1) summary
      cd04730
      Location:10 → 234
      NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...

    2. XM_015795239.3 → XP_015650725.1  uncharacterized protein LOC4345877 isoform X1

      UniProtKB/TrEMBL
      B9G1H1
      Conserved Domains (1) summary
      cd04730
      Location:10 → 234
      NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...

    3. XM_066303398.1 → XP_066159495.1  uncharacterized protein LOC4345877 isoform X3

      UniProtKB/TrEMBL
      A0A0P0XH28, B9G1H1, Q0J4W4

    RNA

    1. XR_003243865.2 RNA Sequence

    2. XR_001548405.3 RNA Sequence

    3. XR_010734432.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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