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    LOC4339516 phosphoethanolamine N-methyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339516, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339516
    Gene description
    phosphoethanolamine N-methyltransferase 1
    Locus tag
    OSNPB_050548900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 177.7), flowers (RPKM 56.9) and 4 other tissues See more
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    Genomic context

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    See LOC4339516 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27393977..27398230, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27229411..27233697, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g07740, mitochondrial Neighboring gene uncharacterized LOC4339515 Neighboring gene putative clathrin assembly protein At2g01600 Neighboring gene serine/threonine-protein kinase STN7, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoethanolamine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylcholine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoethanolamine N-methyltransferase 1
    Names
    Os05g0548900
    phosphomethylethanolamine N-methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27393977..27398230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785333.2 → XP_015640819.1  phosphoethanolamine N-methyltransferase 1

      UniProtKB/TrEMBL
      A0A8J8YSG5, B7FA34, B8AWA2, B9FLG6
      Conserved Domains (1) summary
      PLN02336
      Location:22 → 495
      PLN02336; phosphoethanolamine N-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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